Fusion workflow
Author: Laura Fancello
Workflow description
This is the description of the workflow used to call gene fusions.
| WorkflowID | wfFUS-00-IR5.10 |
| Workflow description | Single samples fusions workflow |
| Research application | Fusions |
| Sample groups | Single |
| Reference genome | hg19 |
| Reference panel design | ACC_lung_translocations_IEO_040116_Designed.bed |
| Annotation | all |
| MyVariant database | MyVariantDefault_hg19 |
| Filter chains | Default Fusions View |
| Final Report | default |
| Parameters | default |
| IR version | 5.10 |
| Workflow name on IR | Fusions_Single_hg19_WG_WG00209_1_All_FilterDefaultFusionsView_OnIR5.10 |
| Created by | Laura Fancello |
| Creation date | 21/06/2018 |
| Other comments | validation results: all fusions detected |
Step-by-step instructions to create the workflow on Ion Reporter
Research application page
Select Research application: Fusions
Select Sample Groups: Single fusions
Reference
Select Reference: hg19
Fusion panel: upload panel design file ACC_lung_translocations_IEO_040116.zip
Annotation page
Default options:
Annotation set: all
MyVariants Database: MyVariantDefaultDb_hg19
Filters
Select Filter chain: Default Fusions View
Plugin page
No plugins: just click on next
Final report
Select Final Report Template
Save the worflow (for the format of the worflow name see WorkflowID); e.g. wfFUS-00-IR5.10.zip
Files
Link to file .zip exported from Ion reporter and containing the workflow: wfFUS-00-IR5.10.zip